Year 2020
type theme author, title, journal, volume, page, year PDF
paper A       Ayaka Sakata and Kunihiko Kaneko  
title 4   "Dimensional reduction in evolving spin-glass model: correlation of phenotypic responses to environmental and mutational changes" https://arxiv.org/abs/2001.03714
          submitted to Phys. Rev. Lett.  
paper A       Qian-YuanTang and Kunihiko Kaneko  
title 4   "Long-range Correlation in Protein Dynamics: Confirmation by Structural Data and Normal Mode Analysis" https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007670
          PLoS Comp. Biol., 16 (2), e1007670 (2020)  
paper A       Y.Matsushita, & K.Kaneko  
title 1   "Homeorhesis in Waddington's Landscape by Epigenetic Feedback Regulation" arXiv preprint arXiv:1912.11994.
          (2019) submitted  
paper       D J.F. Yamagishi and K. Kaneko  
title   1 "Chaos on a High-dimensional Torus" https://arxiv.org/abs/1908.06617
        4 Submitted to Phys.Rev.Research  
paper A   Sato, T. U., and Kaneko, K.  
title 2   "Evolutionary dimension reduction in phenotypic space" https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.2.013197
  4       Phys. Rev. Research, 2 (1), 013197 (2020)  
paper     C   K.Itao and K. Kaneko  
title   4   "Evolution of Kinship Structures Driven by Marriage Tie and Competition" https://www.pnas.org/content/117/5/2378.short
          PNAS, 117 (5), 2378-2384 (2020)  
paper     C   Tomoki Kurikawa, Omri Barak, Kunihiko Kaneko  
title   1   "Repeated sequential learning increases memory capacity via effective decorrelation in a recurrent neural network" https://arxiv.org/abs/1906.11770
          submitted to Phys Rev Research  
paper A       J.F. Yamagishi, N. Saito and K. Kaneko  
title 3   "Advantage of Leakage of Essential Metabolites for Cells" https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.124.048101
  4       Phys. Rev. Lett. 124, 048101 (2020)   
paper A       Y. Himeoka, K. Kaneko  
title 3   "Epigenetic Ratchet: Spontaneous Adaptation via Stochastic Gene Expression" https://www.nature.com/articles/s41598-019-57372-0
          Scientific Reports, 10, 459 (2020)  
paper A       T.S. Hatakeyama, K. Kaneko  
title 3   "Transition in relaxation paths in allosteric molecules: Enzymatic kinetically constrained model" https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.2.012005
          Phys. Rev. Research 2, 012005(R) (2020)  
Review A       C.Furusawa & K. Kaneko  
title 4   "Direction and Constraint in Phenotypic Evolution: Dimension Reduction and Global Proportionality in Phenotype Fluctuation and Responses"  
          Submitted to Evolutionary Systems Biology II, 2019  
Year 2019
type theme author, title, journal, volume, page, year PDF
paper A       Nobuto Takeuchi, Kunihiko Kaneko  
title 2   "The origin of the central dogma through conflicting multilevel selection" https://doi.org/10.1098/rspb.2019.1359
  4       Proc. R. Soc. B, 286: 20191359. (2019)  
paper     C   Y.Fujimoto, K. Kaneko  
title   2 "Emergence of Exploitation as Symmetry Breaking in Iterated Prisoner's Dilemma" https://arxiv.org/abs/1905.06602
      4   Phys.Rev.Research. 1,(2019) 033077  
paper A       Atsushi Kamimura, Kunihiko Kaneko  
title 2   "Molecular Diversity and Network Complexity in Growing Protocells" https://www.mdpi.com/2075-1729/9/2/53
  4       Life (2019)9,53  
paper A       A. Kamimura, Y.J. Matsubara, K. Kaneko, and N. Takeuchi  
title 2   "Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes" https://journals.plos.org/ploscompbiol/article/comments?id=10.1371/journal.pcbi.1007094
  4       PLoS Comp. Biol. e15(2019) e1007094  
paper A   C   E.Nakamura and K. Kaneko  
title 4 4   "Statistical Evolutionary Laws in Music Styles" https://arxiv.org/abs/1809.05832
          Scientific Reports, vol. 9, No. 15993, pp. 1-11, 2019  
paper     C   Y. Fujimoto, K. Kaneko  
title   2 Functional Dynamics by Intention Recognition in Iterated Games https://iopscience.iop.org/article/10.1088/1367-2630/ab0459/meta
      4   New J. Phys. 21, 023025 (2019)  
解説         金子邦彦, 古澤力  
title     適応と進化におけるマクロ現象論――表現型変化の低次元拘束と揺らぎ‒応答関係 https://www.jps.or.jp/books/gakkaishi/2019/03/74-3.php
          日本物理学会誌、第74巻 第3号、137頁 (2019)  
Year 2018
type theme author, title, journal, volume, page, year PDF
paper A       M. Inoue, K. Kaneko  
title 3   "Cooperative reliable response from sloppy gene-expression dynamics" http://iopscience.iop.org/article/10.1209/0295-5075/124/38002/meta 10.1209/0295-5075/124/38002
          EPL, 124, 38002(2018)  
paper A       Y. J. Matsubara and K. Kaneko  
title 2   "Kinetic selection of template polymer with complex sequences" https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.121.118101 10.1103/PhysRevLett.121.118101
          Phys. Rev. Lett. 121, 118101 (2018)  
paper       D Y. Yamaguchi and K. Kaneko  
title   2 "Collective 1/f fluctuation by pseudo-Casimir invariants" https://journals.aps.org/pre/abstract/10.1103/PhysRevE.98.020201 10.1103/PhysRevE.98.020201
        4 Phys. Rev. E 98, 020201(R)(2018)  
paper A       A.Kamimura and K. Kaneko  
title 2   "Exponential growth for self-reproduction in a catalytic reaction network: relevance of a minority molecular species and crowdedness" http://iopscience.iop.org/article/10.1088/1367-2630/aaaf37/meta 10.1088/1367-2630/aaaf37
          New J. Phys. 20 (2018) 035001  
paper   B     T,Kohsokabe and K. Kaneko  
title   2   "Boundary-Induced Pattern Formation from Uniform Temporal Oscillation" https://arxiv.org/abs/1711.07675 10.1063/1.5013280
          Chaos 28, 045110 (2018)  
paper A       K. Kaneko and C. Furusawa  
title 4   "Macroscopic Theory for Evolving Biological Systems Akin to Thermodynamics" https://www.annualreviews.org/doi/abs/10.1146/annurev-biophys-070317-033155 10.1146/annurev-biophys-070317-033155
          Ann. Rev. Biophys, 47(2018) 273-290  
paper A       C. Furusawa and K. Kaneko  
title 4   "Formation of Dominant Mode by Evolution in Biological Systems" http://biorxiv.org/content/early/2017/04/07/125278 10.1101/125278
          Phys. Rev. E 97, 042410 (2018)  
Year 2017
type theme author, title, journal, volume, page, year PDF
paper A       Masahiko Ueda; Nobuto Takeuchi; Kunihiko Kaneko  
title 4   "Stronger selection can slow down evolution driven by recombination on a smooth fitness landscape" https://doi.org/10.1371/journal.pone.0183120
          PLoS ONE12(8): e0183120 (2017)  
paper A       N. Takeuchi, P. Hogeweg, K. Kaneko  
title 2   "The origin of a primordial genome through spontaneous symmetry breaking" https://www.nature.com/articles/s41467-017-00243-x
          Nature Communications 8 (1), 250 (2017)  
paper A       N. Takeuchi, P. Hogeweg, K. Kaneko  
title 2   "Conceptualizing the Origin of Life in terms of Evolution" http://rsta.royalsocietypublishing.org/content/375/2109/20160346
          Phil. Trans. R. Soc. A 375 (2109), 20160346 (2017)  
paper A       Tetsuhiro S. Hatakeyama and Kunihiko Kaneko   
title 3   "Robustness of spatial patterns in buffered reaction-diffusion systems and its reciprocity with phase plasticity" https://journals.aps.org/pre/abstract/10.1103/PhysRevE.95.030201
          Phys. Rev. E., Rapid Communication, 95, 030201(R) (2017)  
paper A       Yusuke Himeoka and Kunihiko Kaneko  
title 2   "Theory for transitions between log and stationary phases: universal laws for lag time" https://journals.aps.org/prx/abstract/10.1103/PhysRevX.7.021049
          Phys. Rev. X 7, 021049 (2017)  
paper     C   Yuma Fujimoto, Takahiro Sagawa and Kunihiko Kaneko  
title   4   "Hierarchical prisoner’s dilemma in hierarchical game for resource competition" http://iopscience.iop.org/article/10.1088/1367-2630/aa7152
          New J. Phys. 19 (2017) 073008  
paper A     D Nen Saito and Kunihiko Kaneko  
title 5 5 "Embedding dual function into molecular motors through collective motion" https://www.nature.com/articles/srep44288?WT.feed_name=subjects_computational-biophysics
          Scientific Reports 7, 44288 (2017)  
paper A       J.T.Young, T.S.Hatakeyama, K. Kaneko  
title 3   "Dynamics Robustness of Linear Signaling Cascades" http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005434
          PLoS Comput Biol 13(3): e1005434  
paper A       K. Kamino, Y. Kondo, A. Nakajima, M. Honda-Kitahara, K. Kaneko, and S. Sawai  
title 3   "Fold-change detection and scale invariance of cell–cell signaling in social amoeba" http://www.pnas.org/content/114/21/E4149.abstract
          PNAS, 114 (21) E4149-E4157 (2017)  
Year 2016
type theme author, title, journal, volume, page, year PDF
paper   B     Yohei Saito, Yuki Sughiyama, Kunihiko Kaneko, Tetsuya J Kobayashi,  
title   1   "Discreteness-induced transitions in multibody reaction systems" https://arxiv.org/abs/1605.06273
          Phys. Rev. E 94(2016), 022140, DOI:10.1103/PhysRevE.94.022140  
paper       D K.Shinoda K. Kaneko  
title   1 "Chaotic Griffiths Phase with Anomalous Lyapunov Spectra in Coupled Map Networks" https://arxiv.org/abs/1605.02191
          Phys. Rev. Lett. 117 (2016), 254101  
paper A B     T Kohsokabe, K Kaneko  
title 1 2   "Boundary-Induced Pattern Formation from Temporal Oscillation: Spatial Map Analysis" http://arxiv.org/abs/1603.01038
          EPL,Europhys.Lett.116 (2016) 48005 (editors's choice)   
paper A       Yamagishi J., Saito N,, and Kaneko K.,  
title 1   "Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates" http://arxiv.org/abs/1512.08085
          PLoS Comp Biol 12(2016) e1005042  
paper A       Takeuchi N.,  Kaneko K., and Hogeweg P.,   
title 2   "Evolutionarily stable disequilibrium: Endless dynamics of evolution in a stationary population" http://rspb.royalsocietypublishing.org/content/283/1830/20153109
          Proc. Roy. Soc. B 283 (2016), 20153109  
paper   B     Nen Saito, Yuki Sughiyama, Kunihiko Kaneko  
title   1   "Motif Analysis for Small-Number Effects in Chemical Reaction Dynamics" http://arxiv.org/abs/1512.02937
          J Chem. Phys., 145(2016)094111  
paper A       M.Hashimoto, T.Nozoe, H.Nakaoka, R.Okura, S.Akiyoshi, K. Kaneko, E.Kussel, Y. Wakamoto  
title 2   "Noise-driven growth rate gain in clonal cellular populations" http://www.pnas.org/content/113/12/3251.abstract
          Proceedings of the National Academy of Sciences,  113, 3251–3256 (2016/3/22)  
paper A       Yusuke Himeoka, Kunihiko Kaneko  
title 2   "Enzyme oscillation can enhance the thermodynamic efficiency of cellular metabolism: Consequence of anti-phase coupling between reaction flux and affinity" http://iopscience.iop.org/article/10.1088/1478-3975/13/2/026002
          Physical Biology,  13, 026002, 2016(featured article)  
paper A       Yoshiya J Matsubara and Kunihiko Kaneko  
title 2   "Optimal size for emergence of self-replicating polymer system" http://arxiv.org/abs/1509.08865
          Phys. Rev. E 93 (2016) 032503  
paper A       B. Pfeuty and K. Kaneko  
title 1   "Requirements for efficient cell-type proportioning: regulatory timescales, stochasticity and lateral inhibition" http://iopscience.iop.org/article/10.1088/1478-3975/13/2/026007
          Physical Biology 13 (2016) 026007  
paper A       A.Kamimura and K. Kaneko  
title 2   "Inverse Relationship Between Molecular Diversity And Resource Abundances" http://arxiv.org/abs/1507.08742
          Physical Rev. E 93 (2016) 062419  
paper     C   T. Kurikawa and K. Kaneko  
title   1   "Dynamic Organization of Hierarchical Memories" http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162640
          PLoS ONE 11(9): e0162640  
review A       K. Kaneko  
title 1   "A Scenario for the Origin of Multicellular Organisms: Perspective from Multi-level Consistency Dynamics" https://mitpress.mit.edu/books/multicellularity
  2    
  4       in Multicullarity: Origins and Evolution, MIT Press, ed. K. Niklas and S. Newman (Feb. 2016)  
paper A       T. Kohsokabe and K. Kaneko  
title 1   "Evolution-Development Congruence in Pattern Formation Dynamics: Bifurcations in Gene Expressions and Regulation of Networks Structures" http://onlinelibrary.wiley.com/doi/10.1002/jez.b.22666/abstract
  4       J. Exp Zoology B 326 (2016) 61-84  
Year 2015
type theme author, title, journal, volume, page, year PDF
paper A       T.Miyamoto, C. Furusawa, and K. Kaneko  
title 1   "Pluripotency, differentiation, and reprogramming: A gene expression dynamics model with epigenetic feedback regulation" http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004476
          PLoS Comp. Biol. 11 (2015) e1004476  
paper A       T. S. Hatakeyama and K. Kaneko  
title 3   "Reciprocity Between Robustness of Period and Plasticity of Phase in Biological Clocks" http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.115.218101
          Phys. Rev. Lett. 115, 218101 (2015)(Highlighted article, featured in Physics)  
paper A       C. Furusawa and K. Kaneko  
title 4   "Global Relationships in Fluctuation and Response in Adaptive Evolution" http://rsif.royalsocietypublishing.org/content/12/109/20150482
          J.of the Royal Society Interface, 12 (2015) 20150482  
paper A       A. Kamimura and K. Kaneko  
title 2   "Transition to diversification by competition for resources in catalytic reaction networks" http://arxiv.org/abs/1408.2298
          Journal of Systems Chemistry 2015, 6:5 http://www.jsystchem.com/content/pdf/s13322-015-0010-1.pdf
paper A       Kunihiko Kaneko, Chikara Furusawa, and Tetsuya Yomo  
title 2   "Universal relationship in gene-expression changes for cells in steady-growth state" http://journals.aps.org/prx/abstract/10.1103/PhysRevX.5.011014
  3    
  4       Physical Review X5 (2015) 011014  
paper   B     N. Saito and K. Kaneko  
title   1   "Theoretical Analysis of Discreteness-Induced Transition in Autocatalytic Reaction Dynamics" http://journals.aps.org/pre/abstract/10.1103/PhysRevE.91.022707
          Phys. Rev. E 91 (2015) 022707  
paper     C   D. Colliaux, P. Yger, K. Kaneko  
title   1   "Impact of sub and supra-threshold adaptation currents in networks of spiking neurons" http://link.springer.com/article/10.1007/s10827-015-0575-3
          Journal of Computational Neuroscience, 39, 255-270, 2015  
paper A       N. Takeuchi, O. X Cordero, E. V Koonin and K. Kaneko  
title 4   "Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection" http://www.biomedcentral.com/1741-7007/13/20
          BMC Biology 2015, 13:20  
review     C D K. Kaneko  
title   2 1 "Dynamical Systems++ for a Theory of Biological System"  
           (Chaos, Information Processing, and Paradoxical Games ( honouring the memory of John Nicolis), World Scientific (ed. G. Nicolis and V. Basios) , 345-354, 2015  
review       D K. Kaneko  
title   1 "From Globally Coupled Maps to Complex-Systems Biology" http://dx.doi.org/10.1063/1.4916925
          Chaos 25, 097608 (2015)  
Year 2014
type theme author, title, journal, volume, page, year PDF
paper A       A. Kamimura and K. Kaneko  
title 2   "Compartmentalization and Cell Division through Molecular Discreteness and Crowding in a Catalytic Reaction Network"  
          Life 2014, 4, 586-597; doi:10.3390/life4040586  
paper A       Y. Himeoka and K. Kaneko  
title 2   "Entropy production of a steady-growth cell with catalytic reactions" http://arxiv.org/abs/1403.3776
          Phys. Rev. E, 90 (2014) 042714  
paper     C   T.Kurikawa and K. Kaneko  
title   1   "Memories as bifurcations: Realization by collective dynamics of spiking neurons under stochastic inputs"  
          Neural Networks (2014 Special Issue)  
paper A       T.S. Hatakeyama and K. Kaneko  
title 3   "Homeostasis of the period of post-translational biochemical oscillators" http://dx.doi.org/10.1016/j.febslet.2014.05.015
  5       FEBS Lett. 588 2282-2287 (2014)  
paper A     D B. Pfeuty and K. Kaneko  
title 1 5 "Reliable binary decisions based on oscillations" http://journals.aps.org/pre/abstract/10.1103/PhysRevE.89.022707
          Physical Review E,89 (2014)022707  
paper A       Tetsuhiro S. Hatakeyama , Kunihiko Kaneko  
title 3   "Kinetic memory based on enzyme-limited competition" http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003784
          PLoS Comput Biol 10: e1003784 (2014) DOI: 10.1371/journal.pcbi.1003784
paper A       Nobuto Takeuchi, Kunihiko Kaneko, and Eugene V. Koonin  
title 4   "Horizontal Gene Transfer Can Stop Muller's Ratchet in Prokaryotes" http://www.g3journal.org/content/4/2/325.full.pdf+html
          G3: Genes, Genomes, Genetics (2014) Feb 19;4(2):325-39.   
paper A       Nen Saito, Shuji Ishihara, and Kunihiko Kaneko  
title 4   "Evolution of Genetic Redundancy : The Relevance of Complexity in Genotype-Phenotype Mapping" http://iopscience.iop.org/1367-2630/16/6/063013
          New J. Physics, (2014) 16, 063013  
review       D Kunihiko Kaneko and Tatsuo Yanagita  
title   3 "Coupled maps" http://www.scholarpedia.org/article/Coupled_maps
          Scholarpedia, 9(5):4085, 2014  
Year 2013
type theme author, title, journal, volume, page, year PDF
paper       D Hidetoshi Aoki and Kunihiko Kaneko  
title   1 "Slow Stochastic Switching by Collective Chaos of Fast Elements" http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.111.144102
          Phys.Rev.Lett., 111, 144102 (2013)   
paper A     D Y. Goto and K. Kaneko  
title 1 5 "Minimal Model for Stem-Cell Differentiation" http://pre.aps.org/abstract/PRE/v88/i3/e032718
          Phys.Rev.E.88(2013) 032718  
paper     C   T. Kurikawa and K. Kaneko  
title   1   "Embedding Responses in Spontaneous Neural Activity Shaped through Sequential Learning" http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002943
          PLoS Computational Biology, 2013, 9, e1002943 (Accepted: January 10, 2013; Published: March 7, 2013)  
paper A     D Yohei Kondo, Kunihiko Kaneko, and Shuji Ishihara  
title 5 5 "Identifying dynamical systems with bifurcations from noisy partial observation" http://pre.aps.org/abstract/PRE/v87/i4/e042716
          Phys. Rev. E., Phys. Rev. E 87, 042716 (19 Apr.2013)   
paper A       Nen Saito, Shuji Ishihara, and Kunihiko Kaneko  
title 4   "The Baldwin effect under multi-peaked fitness landscapes: Phenotypic fluctuation accelerates evolutionary rate" http://pre.aps.org/abstract/PRE/v87/i5/e052701
          Phys. Rev. E 87, 052701 (2013)  
paper A       Chikara Furusawa and Kunihiko Kaneko  
title 3   "Epigenetic feedback regulation accelerates adaptation and evolution" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0061251
          PLoS One 2013, 8, e61251  
paper A       Masayo Inoue, Kunihiko Kaneko  
title 3   "Cooperative Adaptive Response in Gene Regulatory Networks with Many Degrees of Freedom" http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003001
          PLoS Computational Biology, April 2013, Vol.9, Issue 4, e1003001  
paper A       D.Taniguchi, S.Ishihara, T.Ohnuki, M.Kitahara, K.Kaneko, S.Sawai  
title 5   "Phase geometries of two-dimensional excitable waves govern self-organized morphodynamics of amoeboid cells" http://www.pnas.org/content/110/13/5016.full
          Proc.Nat.Acad.Sci.USA, (2013) 110 , 5016-5021  
proceeding   C   Tomoki Kurikawa and Kunihiko Kaneko  
title   1   ""Memories as Bifurcations”: A Simple Model"  
      Advances in Cognitive Neurodynamics, (2013) 537-542  
proceeding     C   Daisuke Shimaoka, Keiichi Kitajo, Kunihiko Kaneko, Yoko Yamaguchi  
title   1   "Ongoing Global Phase Pattern and Visual Signal Detection"  
          Advances in Cognitive Neurodynamics, (2013) 509-514  
proceeding A   Kunihiko Kaneko  
title 4   "Balancing Robustness with Plasticity Through Evolution and Learning"  
      Advances in Cognitive Neurodynamics, (2013) 379-385  
review A       S.Haruta, T.Yoshida, Y.Aoi, K.Kaneko, F.Futamata  
title 4   "Challenges for Complex Microbial Ecosystems: Combination of Experimental Approaches with Mathematical Modeling" https://www.jstage.jst.go.jp/article/jsme2/advpub/0/advpub_ME13034/_pdf
          Microbes and Environments, 28 (2013) 285-294, ME13034  
Year 2012
type theme author, title, journal, volume, page, year PDF
paper A       C. Furusawa and K. Kaneko  
title 1   "A Dynamical-Systems View of Stem Cell Biology" http://www.sciencemag.org/content/338/6104/215.abstract?ijkey=65BP5JfK6kN6g&keytype=ref&siteid=sci
          Science 338 (2012) 215-217 http://www.sciencemag.org/content/338/6104/215.full.pdf?keytype=ref&siteid=sci&ijkey=65BP5JfK6kN6g
paper A       Kunihiko Kaneko  
title 4   "Evolution of Robustness and Plasticity under Environmental Fluctuation: Formulation in terms of Phenotypic Variances" http://www.springerlink.com/content/150819h6t1716580/
          J. Stat. Phys. (Published online Aug.21, 2012) September 2012, Volume 148, Issue 4, pp 686-704  
paper A B     Tetsuhiro S. Hatakeyama, Kunihiko Kaneko  
title 3 3   "Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration" http://www.pnas.org/content/109/21/8109.abstract
  5       PNAS, 109 (21) 8109-8114, 2012 (Published online before print May 7, 2012) ,  featured by Todai Research:   http://www.u-tokyo.ac.jp/en/todai-research/research-highlights/why-biological-clocks-run-on-time/
paper A       Chikara Furusawa and Kunihiko Kaneko  
title 2   "Adaptation to optimal cell growth through self-organized criticality" http://chaos.c.u-tokyo.ac.jp/papers/p2012/FurusawaKK2012PRL.pdf
  3       Phys. Rev. Lett., 108(2012)208103, featured by Complexity Digest  
paper     C   Tomoki Kurikawa and Kunihiko Kaneko  
title   1   "Associative Memory Model with the Spontaneous neural Activity" http://iopscience.iop.org/0295-5075/98/4/48002/article
          Europhys. Lett. 98 (2012) 48002  
paper A       Ayaka Sakata, Koji Hukushima and Kunihiko Kaneko  
title 4   "Replica symmetry breaking in an adiabatic spin-glass model of adaptive evolution" http://iopscience.iop.org/0295-5075/99/6/68004/article
          Europhys. Lett. vol. 99 68004 (2012)  
paper     C   Tomoki Kurikawa, Kunihiko Kaneko  
title   1   "Learning to Memorize Input-Output Mapping as Bifurcation in Neural Dynamics; Relevance of Multiple Timescales for Synapse Changes" http://chaos.c.u-tokyo.ac.jp/papers/p2012/2012KurikawaNeuralCompApp.pdf
          Neural Computing and Applications, 21 (2012), 725-734 (published online 21 May 2011)  
proceeding A   K. Kaneko  
title 2   "From catalytic reaction networks to protocells"  
      to appear in  Engineering of Chemical Complexity"  (ed. A. Mikhailov) ,World Scientific (2012)  
review A       Kunihiko Kaneko  
title 4   "Phenotypic Plasticity and Robustness: Evolutionary Stability Theory, Gene Expression Dynamics Model, and Laboratory Experiments"  
          Evolutionary Systems Biology (2012) (Springer, ed. O. Soyer)  
Year 2011
type theme author, title, journal, volume, page, year PDF
paper A       Narito Suzuki, Chikara Furusawa, and Kunihiko Kaneko  
title 1   "Oscillatory Protein Expression Dynamics Endows Stem Cells with Robust Differentiation Potential" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0027232
          PLoS One 6: e27232 (2011)  
paper A       Yohei Kondo and Kunihiko Kaneko  
title 2   "Growth states of catalytic reaction networks exhibiting energy metabolism" http://arxiv.org/abs/1104.0365
          Physical Rev. E 84, 011927 (2011)  http://chaos.c.u-tokyo.ac.jp/papers/bio1/kondo2011PRE.pdf
paper A       Masayo Inoue and Kunihiko Kaneko http://prl.aps.org/abstract/PRL/v107/i4/e048301
title 3   "Weber’s Law for Biological Responses in Autocatalytic Networks of Chemical Reactions" http://arxiv.org/abs/1104.1380
          Phys. Rev. Lett. 107, 048301 (2011) [4 pages]  http://chaos.c.u-tokyo.ac.jp/papers/bio1/inoue2011PRL.pdf
paper A       K. Kaneko  
title 1   "Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity and robustness" http://onlinelibrary.wiley.com/doi/10.1002/bies.201000153/pdf
          Bioessays 2011 Vol. 33: 403–413 (highlighted article)(2 May) http://chaos.c.u-tokyo.ac.jp/papers/bio1/kaneko2011Bioessay.pdf
paper     C   T. Kurikawa and K. Kaneko  
title   1   "Learning Shapes Spontaneous Activity Itinerating over Memorized States" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0017432
          PLoS One,  (2011) Vol.6, e17432  
paper A       K. Kaneko  
title 4   "Proportionality between Variances in Gene Expression Induced by Noise and Mutation: Consequence of Evolutionary Robustness" http://www.biomedcentral.com/1471-2148/11/27
          BMC Evolutionary Biology 2011, 11:27 (Jan.26)  
paper A       T. Sugawara and K. Kaneko  
title 5   "Chemophoresis as a driving force for intracellular organization: Theory and application to plasmid partitioning" https://www.jstage.jst.go.jp/article/biophysics/7/0/7_0_77/_article
          Biophysics, 7 (2011) 77-88  
paper     C   D. Shimaoka and K. Kaneko  
title   1   "Dynamical systems modeling of continuous flash suppression" http://chaos.c.u-tokyo.ac.jp/papers/p2011/VisRes2011DSandKK.pdf
          Vision Research, Volume 51, Issue 6, 25 March 2011, Pages 521-528  
proceeding A       Kunihiko Kaneko  
title 1   "Complex-Systems Biology Approach to Reproduction and Evolution, in Principles of Evolution : From the Planck Epoch to Complex Multicellular Life"  
  4       Springer, (2011) ed. Meyer-Ortmanns and Tunner  
review A       B. Lehner and K. Kaneko  
title 4   "Fluctuation and response in biology" http://www.springerlink.com/content/2450j20836v67qu4/fulltext.pdf
          Cellular and Molecular Life Sciences, March 2011, Vol.68, 1005-1010  
interview A       Kunihiko Kaneko  
title     "The challenges facing systemic approaches in biology: an interview with Kunihiko Kaneko" http://www.frontiersin.org/systems_physiology/10.3389/fphys.2011.00093/abstract
          Frontiers in Systems Physiology, 2011(Dec.5), Vol. 2, 93(pp1-4)  
Year 2010
type theme author, title, journal, volume, page, year PDF
paper A B     A. Kamimura and K. Kaneko  
title 2 1   "Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network" http://prl.aps.org/pdf/PRL/v105/i26/e268103
        Phys.Rev.Lett., 105 (2010) 268103  
      featured in Science and New Scientist http://news.sciencemag.org/sciencenow/2011/01/can-a-simple-model-explain-the-a.html
            http://www.newscientist.com/article/mg20927942.400-cluster-model-shows-how-first-cells-could-have-divided.html
paper   B     A. Awazu and K. Kaneko  
title   1   "Discreteness-Induced Slow Relaxation in Reversible Catalytic Reaction Networks" http://chaos.c.u-tokyo.ac.jp/papers/bio0/AwazuKK2010.pdf
    3     Phys Rev. E 81(2010), 051920  
paper A       A. Nakajima, T.Isshiki, K. Kaneko and S. Ishihara  
title 1   "Robustness under functional constraint: The genetic network for temporal expression in Drosophila neurogenesis" http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000760
          PLoS Computational Biology, 6(2010)e1000760  
paper A B     M. Inoue and K. Kaneko  
title 3 5   "Dynamics.of Coupled Adatpive Elements: Bursting and Intermitteny Oscillations Generated by Frustration in the Network" http://chaos.c.u-tokyo.ac.jp/papers/biodyn/inoue2010pre.pdf
          Phys. Rev. E 81, 026203 (2010)  
comment A       H. Takagi and K. Kaneko  
title 4   "Topological, statistical, and dynamical origins of genetic code Comment on 'A colorful origin for the genetic code: Information theory, statistical mechanics and the emergence of molecular codes' by T. Tlusty" http://chaos.c.u-tokyo.ac.jp/papers/biodyn/TakagiKK2010PLREV.pdf
          Physics of Life 7 (2010)379-380  
proceeding     C   Tomoki Kurikawa, Kunihiko Kaneko  
title   1   "Learning Shapes Bifurcations of Neural Dynamics upon External Stimuli" http://chaos.c.u-tokyo.ac.jp/papers/others/iconip-latest.pdf
          Lecture Notes in Computer Science 6443, page 153-160, 2010 (the best student paper award)  
proceeding     C   Daisuke Shimaoka, Keiichi Kitajo, Kunihiko Kaneko, Yoko Yamaguchi  
title   1   "Transient process of cortical activity during Necker cube perception: from local clusters to global synchrony" http://chaos.c.u-tokyo.ac.jp/papers/others/Shimaoka-Kitajo-Yamaguchi.pdf
          Nonlinear Biomedical Physics 2010, 4(Suppl 1):S7