Year 2017
type theme author, title, journal, volume, page, year PDF
paper A       C. Furusawa and K. Kaneko  
title 4   "Formation of Dominant Mode by Evolution in Biological Systems" http://biorxiv.org/content/early/2017/04/07/125278
          submitted  
paper A       Masahiko Ueda; Nobuto Takeuchi; Kunihiko Kaneko  
title 4   "Stronger selection can slow down evolution driven by recombination on a smooth fitness landscape"  
          Submitted  
paper A       N. Takeuchi, P. Hogeweg, K. Kaneko  
title 2   "The origin of genes through spontaneous symmetry breaking"  
          Submitted  
paper A       N. Takeuchi, P. Hogeweg, K. Kaneko  
title 2   "Conceptualizing the Origin of Life in terms of Evolution"  
          Submitted to Philosophical Transactions A  
paper A       Tetsuhiro S. Hatakeyama and Kunihiko Kaneko   
title 3   "Robustness of spatial patterns in buffered reaction-diffusion systems and its reciprocity with phase plasticity"  
          Phys. Rev. E., Rapid Communication, 95, 030201(R)  
paper A       Yusuke Himeoka and Kunihiko Kaneko  
title 2   "Theory for transitions between log and stationary phases: universal laws for lag time" http://arxiv.org/abs/1607.03246
          Physical Review X , in press  
paper     C   Yuma Fujimoto, Takahiro Sagawa and Kunihiko Kaneko  
title   4   "Hierarchical prisoner’s dilemma in hierarchical game for resource competition" http://iopscience.iop.org/article/10.1088/1367-2630/aa7152
          New J. Phys. 19 (2017) 073008  
paper A     D Nen Saito and Kunihiko Kaneko  
title 5 5 "Collective motion switches motor direction along filament"  
          Scientific Reports 7, 44288 (2017)  
paper A       J.T.Young, T.S.Hatakeyama, K. Kaneko  
title 3   "Dynamics Robustness of Linear Signaling Cascades" http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005434
          PLoS Comput Biol 13(3): e1005434  
paper A       K. Kamino, Y. Kondo, A. Nakajima, M. Honda-Kitahara, K. Kaneko, and S. Sawai  
title 3   "Fold-change detection and scale invariance of cell–cell signaling in social amoeba" http://www.pnas.org/content/114/21/E4149.abstract
          PNAS, E4149–E4157 (2017)  
Year 2016
type theme author, title, journal, volume, page, year PDF
paper   B     Yohei Saito, Yuki Sughiyama, Kunihiko Kaneko, Tetsuya J Kobayashi,  
title   1   "Discreteness-induced transitions in multibody reaction systems" https://arxiv.org/abs/1605.06273
          Phys. Rev. E 94(2016), 022140, DOI:10.1103/PhysRevE.94.022140  
paper       D K.Shinoda K. Kaneko  
title   1 "Chaotic Griffiths Phase with Anomalous Lyapunov Spectra in Coupled Map Networks" https://arxiv.org/abs/1605.02191
          Phys. Rev. Lett. 117 (2016), 254101  
paper A B     T Kohsokabe, K Kaneko  
title 1 2   "Boundary-Induced Pattern Formation from Temporal Oscillation: Spatial Map Analysis" http://arxiv.org/abs/1603.01038
          EPL,Europhys.Lett.116 (2016) 48005 (editors's choice)   
paper A       Yamagishi J., Saito N,, and Kaneko K.,  
title 1   "Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates" http://arxiv.org/abs/1512.08085
          PLoS Comp Biol 12(2016) e1005042  
paper A       Takeuchi N.,  Kaneko K., and Hogeweg P.,   
title 2   "Evolutionarily stable disequilibrium: Endless dynamics of evolution in a stationary population" http://rspb.royalsocietypublishing.org/content/283/1830/20153109
          Proc. Roy. Soc. B 283 (2016), 20153109  
paper   B     Nen Saito, Yuki Sughiyama, Kunihiko Kaneko  
title   1   "Motif Analysis for Small-Number Effects in Chemical Reaction Dynamics" http://arxiv.org/abs/1512.02937
          J Chem. Phys., 145(2016)094111  
paper A       M.Hashimoto, T.Nozoe, H.Nakaoka, R.Okura, S.Akiyoshi, K. Kaneko, E.Kussel, Y. Wakamoto  
title 2   "Noise-driven growth rate gain in clonal cellular populations" http://www.pnas.org/content/113/12/3251.abstract
          Proceedings of the National Academy of Sciences,  113, 3251–3256 (2016/3/22)  
paper A       Yusuke Himeoka, Kunihiko Kaneko  
title 2   "Enzyme oscillation can enhance the thermodynamic efficiency of cellular metabolism: Consequence of anti-phase coupling between reaction flux and affinity" http://iopscience.iop.org/article/10.1088/1478-3975/13/2/026002
          Physical Biology,  13, 026002, 2016(featured article)  
paper A       Yoshiya J Matsubara and Kunihiko Kaneko  
title 2   "Optimal size for emergence of self-replicating polymer system" http://arxiv.org/abs/1509.08865
          Phys. Rev. E 93 (2016) 032503  
paper A       B. Pfeuty and K. Kaneko  
title 1   "Requirements for efficient cell-type proportioning: regulatory timescales, stochasticity and lateral inhibition" http://iopscience.iop.org/article/10.1088/1478-3975/13/2/026007
          Physical Biology 13 (2016) 026007  
paper A       A.Kamimura and K. Kaneko  
title 2   "Inverse Relationship Between Molecular Diversity And Resource Abundances" http://arxiv.org/abs/1507.08742
          Physical Rev. E 93 (2016) 062419  
paper     C   T. Kurikawa and K. Kaneko  
title   1   "Dynamic Organization of Hierarchical Memories" http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162640
          PLoS ONE 11(9): e0162640  
review A       K. Kaneko  
title 1   "A Scenario for the Origin of Multicellular Organisms: Perspective from Multi-level Consistency Dynamics" https://mitpress.mit.edu/books/multicellularity
  2    
  4       in Multicullarity: Origins and Evolution, MIT Press, ed. K. Niklas and S. Newman (Feb. 2016)  
paper A       T. Kohsokabe and K. Kaneko  
title 1   "Evolution-Development Congruence in Pattern Formation Dynamics: Bifurcations in Gene Expressions and Regulation of Networks Structures" http://onlinelibrary.wiley.com/doi/10.1002/jez.b.22666/abstract
  4       J. Exp Zoology B 326 (2016) 61-84  
Year 2015
type theme author, title, journal, volume, page, year PDF
paper A       T.Miyamoto, C. Furusawa, and K. Kaneko  
title 1   "Pluripotency, differentiation, and reprogramming: A gene expression dynamics model with epigenetic feedback regulation" http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004476
          PLoS Comp. Biol. 11 (2015) e1004476  
paper A       T. S. Hatakeyama and K. Kaneko  
title 3   "Reciprocity Between Robustness of Period and Plasticity of Phase in Biological Clocks" http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.115.218101
          Phys. Rev. Lett. 115, 218101 (2015)(Highlighted article, featured in Physics)  
paper A       C. Furusawa and K. Kaneko  
title 4   "Global Relationships in Fluctuation and Response in Adaptive Evolution" http://rsif.royalsocietypublishing.org/content/12/109/20150482
          J.of the Royal Society Interface, 12 (2015) 20150482  
paper A       A. Kamimura and K. Kaneko  
title 2   "Transition to diversification by competition for resources in catalytic reaction networks" http://arxiv.org/abs/1408.2298
          Journal of Systems Chemistry 2015, 6:5 http://www.jsystchem.com/content/pdf/s13322-015-0010-1.pdf
paper A       Kunihiko Kaneko, Chikara Furusawa, and Tetsuya Yomo  
title 2   "Universal relationship in gene-expression changes for cells in steady-growth state" http://journals.aps.org/prx/abstract/10.1103/PhysRevX.5.011014
  3    
  4       Physical Review X5 (2015) 011014  
paper   B     N. Saito and K. Kaneko  
title   1   "Theoretical Analysis of Discreteness-Induced Transition in Autocatalytic Reaction Dynamics" http://journals.aps.org/pre/abstract/10.1103/PhysRevE.91.022707
          Phys. Rev. E 91 (2015) 022707  
paper     C   D. Colliaux, P. Yger, K. Kaneko  
title   1   "Impact of sub and supra-threshold adaptation currents in networks of spiking neurons" http://link.springer.com/article/10.1007/s10827-015-0575-3
          Journal of Computational Neuroscience, 39, 255-270, 2015  
paper A       N. Takeuchi, O. X Cordero, E. V Koonin and K. Kaneko  
title 4   "Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection" http://www.biomedcentral.com/1741-7007/13/20
          BMC Biology 2015, 13:20  
review     C D K. Kaneko  
title   2 1 "Dynamical Systems++ for a Theory of Biological System"  
           (Chaos, Information Processing, and Paradoxical Games ( honouring the memory of John Nicolis), World Scientific (ed. G. Nicolis and V. Basios) , 345-354, 2015  
review       D K. Kaneko  
title   1 "From Globally Coupled Maps to Complex-Systems Biology" http://dx.doi.org/10.1063/1.4916925
          Chaos 25, 097608 (2015)  
Year 2014
type theme author, title, journal, volume, page, year PDF
paper A       A. Kamimura and K. Kaneko  
title 2   "Compartmentalization and Cell Division through Molecular Discreteness and Crowding in a Catalytic Reaction Network"  
          Life 2014, 4, 586-597; doi:10.3390/life4040586  
paper A       Y. Himeoka and K. Kaneko  
title 2   "Entropy production of a steady-growth cell with catalytic reactions" http://arxiv.org/abs/1403.3776
          Phys. Rev. E, 90 (2014) 042714  
paper     C   T.Kurikawa and K. Kaneko  
title   1   "Memories as bifurcations: Realization by collective dynamics of spiking neurons under stochastic inputs"  
          Neural Networks (2014 Special Issue)  
paper A       T.S. Hatakeyama and K. Kaneko  
title 3   "Homeostasis of the period of post-translational biochemical oscillators" http://dx.doi.org/10.1016/j.febslet.2014.05.015
  5       FEBS Lett. 588 2282-2287 (2014)  
paper A     D B. Pfeuty and K. Kaneko  
title 1 5 "Reliable binary decisions based on oscillations" http://journals.aps.org/pre/abstract/10.1103/PhysRevE.89.022707
          Physical Review E,89 (2014)022707  
paper A       Tetsuhiro S. Hatakeyama , Kunihiko Kaneko  
title 3   "Kinetic memory based on enzyme-limited competition" http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003784
          PLoS Comput Biol 10: e1003784 (2014) DOI: 10.1371/journal.pcbi.1003784
paper A       Nobuto Takeuchi, Kunihiko Kaneko, and Eugene V. Koonin  
title 4   "Horizontal Gene Transfer Can Stop Muller's Ratchet in Prokaryotes" http://www.g3journal.org/content/4/2/325.full.pdf+html
          G3: Genes, Genomes, Genetics (2014) Feb 19;4(2):325-39.   
paper A       Nen Saito, Shuji Ishihara, and Kunihiko Kaneko  
title 4   "Evolution of Genetic Redundancy : The Relevance of Complexity in Genotype-Phenotype Mapping" http://iopscience.iop.org/1367-2630/16/6/063013
          New J. Physics, (2014) 16, 063013  
review       D Kunihiko Kaneko and Tatsuo Yanagita  
title   3 "Coupled maps" http://www.scholarpedia.org/article/Coupled_maps
          Scholarpedia, 9(5):4085, 2014  
Year 2013
type theme author, title, journal, volume, page, year PDF
paper       D Hidetoshi Aoki and Kunihiko Kaneko  
title   1 "Slow Stochastic Switching by Collective Chaos of Fast Elements" http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.111.144102
          Phys.Rev.Lett., 111, 144102 (2013)   
paper A     D Y. Goto and K. Kaneko  
title 1 5 "Minimal Model for Stem-Cell Differentiation" http://pre.aps.org/abstract/PRE/v88/i3/e032718
          Phys.Rev.E.88(2013) 032718  
paper     C   T. Kurikawa and K. Kaneko  
title   1   "Embedding Responses in Spontaneous Neural Activity Shaped through Sequential Learning" http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002943
          PLoS Computational Biology, 2013, 9, e1002943 (Accepted: January 10, 2013; Published: March 7, 2013)  
paper A     D Yohei Kondo, Kunihiko Kaneko, and Shuji Ishihara  
title 5 5 "Identifying dynamical systems with bifurcations from noisy partial observation" http://pre.aps.org/abstract/PRE/v87/i4/e042716
          Phys. Rev. E., Phys. Rev. E 87, 042716 (19 Apr.2013)   
paper A       Nen Saito, Shuji Ishihara, and Kunihiko Kaneko  
title 4   "The Baldwin effect under multi-peaked fitness landscapes: Phenotypic fluctuation accelerates evolutionary rate" http://pre.aps.org/abstract/PRE/v87/i5/e052701
          Phys. Rev. E 87, 052701 (2013)  
paper A       Chikara Furusawa and Kunihiko Kaneko  
title 3   "Epigenetic feedback regulation accelerates adaptation and evolution" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0061251
          PLoS One 2013, 8, e61251  
paper A       Masayo Inoue, Kunihiko Kaneko  
title 3   "Cooperative Adaptive Response in Gene Regulatory Networks with Many Degrees of Freedom" http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003001
          PLoS Computational Biology, April 2013, Vol.9, Issue 4, e1003001  
paper A       D.Taniguchi, S.Ishihara, T.Ohnuki, M.Kitahara, K.Kaneko, S.Sawai  
title 5   "Phase geometries of two-dimensional excitable waves govern self-organized morphodynamics of amoeboid cells" http://www.pnas.org/content/110/13/5016.full
          Proc.Nat.Acad.Sci.USA, (2013) 110 , 5016-5021  
proceeding   C   Tomoki Kurikawa and Kunihiko Kaneko  
title   1   ""Memories as Bifurcations”: A Simple Model"  
      Advances in Cognitive Neurodynamics, (2013) 537-542  
proceeding     C   Daisuke Shimaoka, Keiichi Kitajo, Kunihiko Kaneko, Yoko Yamaguchi  
title   1   "Ongoing Global Phase Pattern and Visual Signal Detection"  
          Advances in Cognitive Neurodynamics, (2013) 509-514  
proceeding A   Kunihiko Kaneko  
title 4   "Balancing Robustness with Plasticity Through Evolution and Learning"  
      Advances in Cognitive Neurodynamics, (2013) 379-385  
review A       S.Haruta, T.Yoshida, Y.Aoi, K.Kaneko, F.Futamata  
title 4   "Challenges for Complex Microbial Ecosystems: Combination of Experimental Approaches with Mathematical Modeling" https://www.jstage.jst.go.jp/article/jsme2/advpub/0/advpub_ME13034/_pdf
          Microbes and Environments, 28 (2013) 285-294, ME13034  
Year 2012
type theme author, title, journal, volume, page, year PDF
paper A       C. Furusawa and K. Kaneko  
title 1   "A Dynamical-Systems View of Stem Cell Biology" http://www.sciencemag.org/content/338/6104/215.abstract?ijkey=65BP5JfK6kN6g&keytype=ref&siteid=sci
          Science 338 (2012) 215-217 http://www.sciencemag.org/content/338/6104/215.full.pdf?keytype=ref&siteid=sci&ijkey=65BP5JfK6kN6g
paper A       Kunihiko Kaneko  
title 4   "Evolution of Robustness and Plasticity under Environmental Fluctuation: Formulation in terms of Phenotypic Variances" http://www.springerlink.com/content/150819h6t1716580/
          J. Stat. Phys. (Published online Aug.21, 2012) September 2012, Volume 148, Issue 4, pp 686-704  
paper A B     Tetsuhiro S. Hatakeyama, Kunihiko Kaneko  
title 3 3   "Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration" http://www.pnas.org/content/109/21/8109.abstract
  5       PNAS, 109 (21) 8109-8114, 2012 (Published online before print May 7, 2012) ,  featured by Todai Research:   http://www.u-tokyo.ac.jp/en/todai-research/research-highlights/why-biological-clocks-run-on-time/
paper A       Chikara Furusawa and Kunihiko Kaneko  
title 2   "Adaptation to optimal cell growth through self-organized criticality" http://chaos.c.u-tokyo.ac.jp/papers/p2012/FurusawaKK2012PRL.pdf
  3       Phys. Rev. Lett., 108(2012)208103, featured by Complexity Digest  
paper     C   Tomoki Kurikawa and Kunihiko Kaneko  
title   1   "Associative Memory Model with the Spontaneous neural Activity" http://iopscience.iop.org/0295-5075/98/4/48002/article
          Europhys. Lett. 98 (2012) 48002  
paper A       Ayaka Sakata, Koji Hukushima and Kunihiko Kaneko  
title 4   "Replica symmetry breaking in an adiabatic spin-glass model of adaptive evolution" http://iopscience.iop.org/0295-5075/99/6/68004/article
          Europhys. Lett. vol. 99 68004 (2012)  
paper     C   Tomoki Kurikawa, Kunihiko Kaneko  
title   1   "Learning to Memorize Input-Output Mapping as Bifurcation in Neural Dynamics; Relevance of Multiple Timescales for Synapse Changes" http://chaos.c.u-tokyo.ac.jp/papers/p2012/2012KurikawaNeuralCompApp.pdf
          Neural Computing and Applications, 21 (2012), 725-734 (published online 21 May 2011)  
proceeding A   K. Kaneko  
title 2   "From catalytic reaction networks to protocells"  
      to appear in  Engineering of Chemical Complexity"  (ed. A. Mikhailov) ,World Scientific (2012)  
review A       Kunihiko Kaneko  
title 4   "Phenotypic Plasticity and Robustness: Evolutionary Stability Theory, Gene Expression Dynamics Model, and Laboratory Experiments"  
          Evolutionary Systems Biology (2012) (Springer, ed. O. Soyer)  
Year 2011
type theme author, title, journal, volume, page, year PDF
paper A       Narito Suzuki, Chikara Furusawa, and Kunihiko Kaneko  
title 1   "Oscillatory Protein Expression Dynamics Endows Stem Cells with Robust Differentiation Potential" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0027232
          PLoS One 6: e27232 (2011)  
paper A       Yohei Kondo and Kunihiko Kaneko  
title 2   "Growth states of catalytic reaction networks exhibiting energy metabolism" http://arxiv.org/abs/1104.0365
          Physical Rev. E 84, 011927 (2011)  http://chaos.c.u-tokyo.ac.jp/papers/bio1/kondo2011PRE.pdf
paper A       Masayo Inoue and Kunihiko Kaneko http://prl.aps.org/abstract/PRL/v107/i4/e048301
title 3   "Weber’s Law for Biological Responses in Autocatalytic Networks of Chemical Reactions" http://arxiv.org/abs/1104.1380
          Phys. Rev. Lett. 107, 048301 (2011) [4 pages]  http://chaos.c.u-tokyo.ac.jp/papers/bio1/inoue2011PRL.pdf
paper A       K. Kaneko  
title 1   "Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity and robustness" http://onlinelibrary.wiley.com/doi/10.1002/bies.201000153/pdf
          Bioessays 2011 Vol. 33: 403–413 (highlighted article)(2 May) http://chaos.c.u-tokyo.ac.jp/papers/bio1/kaneko2011Bioessay.pdf
paper     C   T. Kurikawa and K. Kaneko  
title   1   "Learning Shapes Spontaneous Activity Itinerating over Memorized States" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0017432
          PLoS One,  (2011) Vol.6, e17432  
paper A       K. Kaneko  
title 4   "Proportionality between Variances in Gene Expression Induced by Noise and Mutation: Consequence of Evolutionary Robustness" http://www.biomedcentral.com/1471-2148/11/27
          BMC Evolutionary Biology 2011, 11:27 (Jan.26)  
paper A       T. Sugawara and K. Kaneko  
title 5   "Chemophoresis as a driving force for intracellular organization: Theory and application to plasmid partitioning" https://www.jstage.jst.go.jp/article/biophysics/7/0/7_0_77/_article
          Biophysics, 7 (2011) 77-88  
paper     C   D. Shimaoka and K. Kaneko  
title   1   "Dynamical systems modeling of continuous flash suppression" http://chaos.c.u-tokyo.ac.jp/papers/p2011/VisRes2011DSandKK.pdf
          Vision Research, Volume 51, Issue 6, 25 March 2011, Pages 521-528  
proceeding A       Kunihiko Kaneko  
title 1   "Complex-Systems Biology Approach to Reproduction and Evolution, in Principles of Evolution : From the Planck Epoch to Complex Multicellular Life"  
  4       Springer, (2011) ed. Meyer-Ortmanns and Tunner  
review A       B. Lehner and K. Kaneko  
title 4   "Fluctuation and response in biology" http://www.springerlink.com/content/2450j20836v67qu4/fulltext.pdf
          Cellular and Molecular Life Sciences, March 2011, Vol.68, 1005-1010  
interview A       Kunihiko Kaneko  
title     "The challenges facing systemic approaches in biology: an interview with Kunihiko Kaneko" http://www.frontiersin.org/systems_physiology/10.3389/fphys.2011.00093/abstract
          Frontiers in Systems Physiology, 2011(Dec.5), Vol. 2, 93(pp1-4)  
Year 2010
type theme author, title, journal, volume, page, year PDF
paper A B     A. Kamimura and K. Kaneko  
title 2 1   "Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network" http://prl.aps.org/pdf/PRL/v105/i26/e268103
        Phys.Rev.Lett., 105 (2010) 268103  
      featured in Science and New Scientist http://news.sciencemag.org/sciencenow/2011/01/can-a-simple-model-explain-the-a.html
            http://www.newscientist.com/article/mg20927942.400-cluster-model-shows-how-first-cells-could-have-divided.html
paper   B     A. Awazu and K. Kaneko  
title   1   "Discreteness-Induced Slow Relaxation in Reversible Catalytic Reaction Networks" http://chaos.c.u-tokyo.ac.jp/papers/bio0/AwazuKK2010.pdf
    3     Phys Rev. E 81(2010), 051920  
paper A       A. Nakajima, T.Isshiki, K. Kaneko and S. Ishihara  
title 1   "Robustness under functional constraint: The genetic network for temporal expression in Drosophila neurogenesis" http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000760
          PLoS Computational Biology, 6(2010)e1000760  
paper A B     M. Inoue and K. Kaneko  
title 3 5   "Dynamics.of Coupled Adatpive Elements: Bursting and Intermitteny Oscillations Generated by Frustration in the Network" http://chaos.c.u-tokyo.ac.jp/papers/biodyn/inoue2010pre.pdf
          Phys. Rev. E 81, 026203 (2010)  
comment A       H. Takagi and K. Kaneko  
title 4   "Topological, statistical, and dynamical origins of genetic code Comment on 'A colorful origin for the genetic code: Information theory, statistical mechanics and the emergence of molecular codes' by T. Tlusty" http://chaos.c.u-tokyo.ac.jp/papers/biodyn/TakagiKK2010PLREV.pdf
          Physics of Life 7 (2010)379-380  
proceeding     C   Tomoki Kurikawa, Kunihiko Kaneko  
title   1   "Learning Shapes Bifurcations of Neural Dynamics upon External Stimuli" http://chaos.c.u-tokyo.ac.jp/papers/others/iconip-latest.pdf
          Lecture Notes in Computer Science 6443, page 153-160, 2010 (the best student paper award)  
proceeding     C   Daisuke Shimaoka, Keiichi Kitajo, Kunihiko Kaneko, Yoko Yamaguchi  
title   1   "Transient process of cortical activity during Necker cube perception: from local clusters to global synchrony" http://chaos.c.u-tokyo.ac.jp/papers/others/Shimaoka-Kitajo-Yamaguchi.pdf
          Nonlinear Biomedical Physics 2010, 4(Suppl 1):S7  
Year 2009
type theme author, title, journal, volume, page, year PDF
paper A   B. Pfeuty and K. Kaneko  
title 3   "The combination of positive and negative feedback loops confers exquisite flexibility to biochemical switches" http://chaos.c.u-tokyo.ac.jp/papers/bio1/benjamin2009.pdf
          Physical Biology, 6 (2009) 046013  
paper A       A. Sakata, K Hukushima, and K. Kaneko  
title 4   "A statistical-mechanical study of evolution of robustness in noisy environment" http://chaos.c.u-tokyo.ac.jp/papers/bio1/sakata2009pre.pdf
          Phys. Rev. E.80, (2009) 051919  
paper A B     A. Awazu and K. Kaneko  
title 2 3   "Ubiquitous “glassy” relaxation in catalytic reaction networks" http://chaos.c.u-tokyo.ac.jp/papers/bio0/awazu-kk2009PREglass.pdf
          Phys Rev. E, 80, 041931 (2009)  
paper A B     A. Awazu and K. Kaneko  
title 2 1   "Self-organized criticality of a catalytic reaction network under flow" http://chaos.c.u-tokyo.ac.jp/papers/bio0/AK-SOC.pdf
          Phys. Rev. E.80, 010902(R) 2009 (Rapid Communication)  
paper A       S.Tsuru, J.Ichinose, T. Sakurai, A.Kashiwagi, B-W. Ying, K. Kaneko, and T. Yomo http://chaos.c.u-tokyo.ac.jp/papers/bio1/tsuru.pdf
title 2   "Noisy cell growth rate leads to fluctuating protein concentration in bacteria" Supplement
          Physical Biology 6 (2009) 036015 http://chaos.c.u-tokyo.ac.jp/papers/bio1/tsuru_suppl.pdf
paper A       K. Kaneko  
title 4   "Relationship among Phenotypic Plasticity, Genetic and Epigenetic Fluctuations, Robustness, and Evolovability; Waddington's Legacy revisited under the Spirit of Einstein" http://chaos.c.u-tokyo.ac.jp/papers/bio1/kkjbs2009.pdf
          J. Biological Science, 34 (2009) 529-542  
paper A       C. Furusawa and K. Kaneko  
title 1   "Chaotic Expression Dynamics Implies Pluripotency: When Theory and Experimentation Meet" http://www.biology-direct.com/content/4/1/17
          Biology Direct 4 (2009) 17  
paper A       H. Yoshida and K. Kaneko  
title 1   "Unified description of regeneration by coupled dynamical systems theory: Intercalary/segmented regeneration in insect legs" http://chaos.c.u-tokyo.ac.jp/papers/bio1/yoshida2009DD.pdf
          Developmental Dynamics 238 (2009) 1974-1983  
paper A       A. Sakata, K Hukushima, and K. Kaneko  
title 4   "Funnel landscape and mutational robustness as a result of evolution under thermal noise" http://chaos.c.u-tokyo.ac.jp/papers/bio1/shk-prl.pdf
          Phys. Rev. Lett., 102 (2009) 148101  
paper A       Y.Ito, H.Toyota, K. Kaneko, and T. Yomo http://www.nature.com/msb/journal/v5/n1/full/msb200923.html
title 4   "How Selection affects Phenotypic Fluctuation" Supporting Information
          Molecular Systems Biology, 5 (2009) 264 http://www.nature.com/msb/journal/v5/n1/suppinfo/msb200923_S1.html
review       D J. Ito and K. Kaneko  
title   1 ""Self-Organization of Network Structure in Coupled-map Systems" in "Adaptive Networks"" http://chaos.c.u-tokyo.ac.jp/papers/biodyn/JI-KK_AdaptiveNetworks.pdf
          ed. H. Sayama and T.Gross. (2009)  
proceeding A       Ayaka Sakata, Koji Hukushima, and Kunihiko Kaneko  
title 4   "A statistical-mechanical study of evolution of robustness: An approach from two-temperature models"  
          Journal of Physics: Conference Series 197 (2009) 012003  
Year 2008
type theme author, title, journal, volume, page, year PDF
paper A       B. Pfeuty, T. David-Pfeuty, and K. Kaneko  
title 5   "Underlying Principles of cell fate determination during G1 phase of the mammalian cell cycle" http://chaos.c.u-tokyo.ac.jp/papers/bio1/Pfeuty2008.pdf
          Cell Cycle 7 (2008) 1-13  
paper A       K. Kaneko  
title 4   "Shaping Robust System Through Evolution" http://chaos.c.u-tokyo.ac.jp/papers/bio1/chaos2008.pdf
          Chaos, 18 (2008) 026112  
paper A       K. Kaneko and C. Furusawa  
title 2   "Consistency Principle in Biological Dynamical Systems" http://chaos.c.u-tokyo.ac.jp/papers/bio1/eccs.pdf
  4       Theory in Biosciences, 127 (2008) 195-204  
paper A       A. Nakajima and K. Kaneko  
title 1   "Regulative Differentiation as Bifurcation of Interacting Cell Population" http://chaos.c.u-tokyo.ac.jp/papers/bio1/diff.pdf
          J. Theor Biol. 253 (2008) 779-787  
paper A       M. Inoue and K. Kaneko  
title 3   "Conditions for self-consistent aggregation by chemotactic particles" http://chaos.c.u-tokyo.ac.jp/papers/bio1/inoue_chemoagg08.pdf
          Phys. Rev. E 77, 041916 (2008)  
paper A       K. Kaneko, K. Sato, T. Michiue, K. Okabayashi, K. Ohnuma, H. Danno, and M. Asashima  
title 1   "Developmental Potential Describing Morphogenesis in vivo and in vitro" http://chaos.c.u-tokyo.ac.jp/papers/bio1/asashima-JEZ-final.pdf
          J. Experimental Zoology B 310 (2008) 492-503  
paper A       K. Fujimoto, S. Ishihara, and K. Kaneko  
title 1   "Network Evolution of Body Plans" http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0002772
  4       PLoS ONE, 3 (2008) e2772  
paper A       C. Furusawa and K. Kaneko http://compbiol.plosjournals.org/perlserv/?request=get-document&doi=10.1371/journal.pcbi.0040003
title 3   "A generic mechanism for adaptive gowth rate regulation" selected in Faculty of 1000 Biology
          PLoS Computationa Biology, 4(2008) e3 http://www.f1000biology.com/article/id/1104005
paper A       T. Toyota, K. Takakura, Y. Kageyama, K. Kurihara, N. Maru, K. Ohnuma, K. Kaneko, and T. Sugawara  
title 2   "Population study of sizes and components of self-reproducing giant multilamellar vesicles."  
          Langmuir,24 (2008) 3037-3044  
review A       K. Kaneko and C. Furusawa  
title 5   "Relevance of Phenotypic Noise to Adaptation and Evolution" http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ISBEAT000002000005000234000001&idtype=cvips&gifs=Yes
          IET Systems Biology, 2 (2008) 234-246  
review A       K. Kaneko  
title 2   " "Constructive Approach to Protocell: Theory and Experiments" in "Protocell"" http://chaos.c.u-tokyo.ac.jp/papers/others/protocell.pdf
          ed. M. Bedau et al. (2008)  
Year 2007
type theme author, title, journal, volume, page, year PDF
paper A       B. Pfeuty and K. Kaneko  
title 2   "Minimal requirements for a robust cell size control in eukaryotic cells" http://chaos.c.u-tokyo.ac.jp/papers/bio1/benjamin2007.pdf
          Physical Biology, 4 (2007) 194-204  
paper   B     A. Awazu and K. Kaneko  
title   1   "Discretenss-induced Transition in Catalytic Reaction Networks" http://chaos.c.u-tokyo.ac.jp/papers/biodyn/awazu2007.pdf
          Phys Rev. E76, 041915 (2007)  
paper A       K. Kaneko  
title 4   "Evolution of Robustness to Noise and Mutation in Gene Expression Dynamics" http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0000434
          PLoS One(2007) 2 e434  
paper A       K. Sato and K. Kaneko  
title 4   "Evolution Equation of Phenotype Distribution: General Formulation and Application to Error Catastrophe" http://chaos.c.u-tokyo.ac.jp/papers/bio1/sato-pre.pdf
          Phys. Rev. E75 (2007) 061909  
paper   B     Y. Watanabe and K. Kaneko  
title   5   "State Generation by Transient Truncation in Coupled Threshold Dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/watanabe.pdf
          Phys. Rev. E., 75 (2007) 016206  
paper   B     Y. Togashi and K. Kaneko  
title   1   "Switching Dynamics in reaction Networks Induced by Molecular Discreteness"  
          J. Phys. Condens. Matt. 19,(2007) 065150 (10p)   
proceeding A       Kunihiko Kaneko  
title 2   "From a set of chemical reactions to reproducing cells"  
          Origin of Life and Evolution of the Biosphere, 37 (2007) 449-453  
proceeding A       Kunihiko Kaneko  
title 2   "Minority control and Genetic Takeover"  
          Origin of Life and Evolution of the Biosphere, 37(2007) 465-468  
proceeding A       Chikara Furusawa and Kunihiko Kaneko  
title 2   "Universal Statistics for Chemical Abundances in Reprducing Cell"  
          Journal of Korean Physical Scoiety, 2007, vol.50 142-149  
Year 2006
type theme author, title, journal, volume, page, year PDF
paper A       A. Kashiwagi, I. Urabe, K. Kaneko and T. Yomo  
title 3   "Adaptive response of a gene network to environmental changes by attractor selection" http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0000049
          PLOS ONE 1 (2006) e49  (selected for Faculty of 1000 Biology )   
paper A       D. Lawson, H.J. Jensen and K. Kaneko  
title 4   "Diversity as a product of interspecial interactions" http://chaos.c.u-tokyo.ac.jp/papers/bio1/diversity.pdf
          J theor. Biol. 243(2006) 299-307  
paper A       M. Inoue and K. Kaneko  
title 3   "Condition for Intra-cellular Adaptive Dynamics for Chemotaxis" http://chaos.c.u-tokyo.ac.jp/papers/bio1/ChemotaxisCondition0217.pdf
          Phys. Rev. E., 74 (2006) 011903  
paper A       K. Sato and K. Kaneko  
title 2   "On the Distribution of State Values of Reproducing Cells" http://chaos.c.u-tokyo.ac.jp/papers/bio1/growthFP.pdf
          Physical Biology 3 (2006) 74-82  
paper   B   D H. Morita and K. Kaneko  
title   3 2 "Collective oscillation in a Hamiltonian dynamical system" http://chaos.c.u-tokyo.ac.jp/papers/hamil/morita-collective.pdf
          Phys. Rev. Lett.96 (2006) 050602  
paper A B     S. Ishihara and K. Kaneko  
title 1 2   "Turing pattern with proportion preservation" http://chaos.c.u-tokyo.ac.jp/papers/bio1/Turing.pdf
          J. Theo. Biol. 238 (2006) 683-693  
paper A       K. Kaneko and C. Furusawa  
title 4   "An Evolutionary Relationship between Genetic Variation and Phenotypic Fluctuation" http://chaos.c.u-tokyo.ac.jp/papers/bio1/jtbevol2006.pdf
          J. Theo. Biol. 240 (2006) 78-86  
paper A       C.Furusawa and K. Kaneko  
title 1   "Morphogenesis, Plasticity, and Irreversibility" http://chaos.c.u-tokyo.ac.jp/papers/bio1/furusawa-morpho2006.pdf
          International Journal Developmental Biology, 50 (2006) 223-232  
paper A       C.Furusawa and K. Kaneko  
title 2   "Evolutionary origin of power-laws in Biochemical Reaction Network; embedding abundance distribution into topology" http://chaos.c.u-tokyo.ac.jp/papers/bio1/network.pdf
  4       Phys. Rev. E 73, (2006) 011912  
paper     C   A. Ponzi, A. Yasutomi and K. Kaneko  
title   4   "Complex Dynamical Behavior in Economic Production Networks" http://chaos.c.u-tokyo.ac.jp/papers/others/jebjune04.pdf
          Journal of Economic Behavior and Organization, 61 (2006) 729-749  
paper A       Kiyoshi Ohnuma, Tetsuya Yomo, Makoto Asashima and Kunihiko Kaneko  
title 5   "Sorting of cells of the same size, shape, and cell cycle stage for a single cell level assay without staining" http://www.biomedcentral.com/1471-2121/7/25/
          BMC Cell Biology 2006, 7:25  
review A       K. Kaneko  
title 1   " "Consistency Principle in a Biological System" Crossraods"  
  2       Journal of Asia Pacific Center for Theoretical Physics Vol.13. Oct. 2006  
proceeding       D Hidetoshi Morita and Kunihiko Kaneko  
title   1 "Self-organization of collective oscillation in many body systems"  
        2 Institute of Physics Publishing Journal of Physics: Conference Series 31 (2006) 63?67 / The Third 21COE Symposium: Astrophysics as Interdisciplinary Science  
proceeding   B     Akinori Awazu and Kunihiko Kaneko  
title   2   "Pulse Replications and spatially differentiated structure formation in one-dimensional lattice dynamical system"  
          Mathematical Biosciences 201 (2006) 90-100  
proceeding       D Takeshi Sugawara and Kunihiko Kaneko  
title   3 "Pattern Dynamics in a Two-dimensional Gas Discharge System"  
          Prog. Theor. Phys. Suppl. 161 (2006) 344-347  
proceeding       D Hidetoshi Morita and Kunihiko Kaneko  
title   1 "Collective Motion as a Transient Structure in a Hamiltonain Dynamical System"  
        2 Prog. Theor. Phys. Suppl. 162 (2006) 104-111  
Book         K. Kaneko  
title     Life: An Introduction to Complex Systems Biology http://www.amazon.com/dp/3642069150/
          Springer 2006  
Year 2005
type theme author, title, journal, volume, page, year PDF
paper   B     K. Kaneko  
title   5   "Inter-Intra Molecular Dynamics as an Iterated Function System" http://chaos.c.u-tokyo.ac.jp/papers/others/ifs.pdf
          J. Phys. Soc. Japan 74 (2005), 2386-2390  
paper   B C D S. Ishihara and K. Kaneko  
title   5 3 1 "Magic number 7 ± 2 in networks of threshold dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/PhysRevLett_94_058102.pdf
          Phys. Rev. Lett., 94(2005) 058102  
paper   B   D H. Morita and K. Kaneko  
title   3 2 "Roundabout relaxation: collective excitation requires a detour to equilibrium" http://chaos.c.u-tokyo.ac.jp/papers/hamil/morita_1d.pdf
          Phys. Rev. Lett., 94 (2005) 087203  
paper A       C. Furusawa, T. Suzuki, A. Kashiwagi, T. Yomo, and K. Kaneko  
title 2   "Ubiquity of Log-normal Distributions in Intra-cellular Reaction Dynamics" http://chaos.c.u-tokyo.ac.jp/papers/bio1/furusawa05_02.pdf
          BIOPHYSICS, 1(2005) 25  
paper A       K. Kaneko  
title 2   "On Recursive Production and Evolvabilty of Cells: Catalytic Reaction Network Approach" http://chaos.c.u-tokyo.ac.jp/papers/bio1/adv.pdf
          Adv. Chem. Phys. , 130 (2005) 543-598  
paper A       H. Yoshida, C.Furusawa and K. Kaneko  
title 1   "Selection of initial condition for recursive production of multicellular organisms" http://chaos.c.u-tokyo.ac.jp/papers/others/yoshi-furu04.pdf
          J. theor. Biol.233, (2005) 501-514  
paper A       H. Takagi and K. Kaneko  
title 1   "Dynamical Systems Basis of Metamorphosis: Diversity and Plasticity of Cellular States in Reaction Diffusion Netowork" http://chaos.c.u-tokyo.ac.jp/papers/others/htakagi-jtb-revise2.pdf
          Journal of Theoretical Biology, 234, (2005) 173-186  
paper   B     Y. Togashi and K. Kaneko  
title   1   "Discreteness-induced Stochastic Steady State in Reaction Diffusion Systems: Self-consistent Analysis and Stochastic Simulations" http://chaos.c.u-tokyo.ac.jp/papers/others/togashi-kura.pdf
          Physica D 205(2005) 87-99  
paper       D F. Willeboordse and K. Kaneko  
title   1 "Externally controlled attractor selection in a high-dimensional system" http://chaos.c.u-tokyo.ac.jp/papers/FrederickPRE2005.pdf
          Phys. Rev. E. , 72 (2005) 026207  
paper       D S. Honjo and K. Kaneko  
title   2 "Structure of Resonances and Transport in Multidimensional Hamiltonian Dynamical Systems"  
          Adv.Chem.Phys.,130 (2005) 437-463  
review A       K. Kaneko and Chikara Furusawa  
title 2   " "Universal Statistics of Cells with Recursive Production"" in "Networks of interacting machines: productuion orgganization in complex industrial systems and biological cells"" http://chaos.c.u-tokyo.ac.jp/papers/others/mikhailov.pdf
          World Scientific. ed. A Mikhailov et al. (2005)  
review       D K. Kaneko  
title   3 "Coupled Map Lattices"  
          Encyclopedia of Nonlinear Science. Ed. Alwyn Scott. New York: Routledge, 2005.  
proceeding A       Tetsuya Yomo, Yoichiro Ito, Katsuhiko Sato, Kunihiko Kaneko  
title 4   "Phenotypic fluctuation rendered by a single genotype and evolutionary rate"  
          Physica A 350 (2005) 1-5  
Year 2004
type theme author, title, journal, volume, page, year PDF
paper   B     K. Fujimoto and K. Kaneko  
title   5   "Convective Instability with Time Scale Translation of the Transmitted Disturbance" http://chaos.c.u-tokyo.ac.jp/papers/others/fujimoto-physD2004.pdf
          Physica D, 196, 67-89. 2004  
paper   B     Y. Togashi and K. Kaneko  
title   1   "Molecular discreteness in reaction-diffusion systems yields steady states not seen in the continuum limit" http://chaos.c.u-tokyo.ac.jp/papers/pr/TogashiKaneko2004PRE.pdf
          Phys. Rev. E, 70, 020901(R). 2004  
paper   B     A.Awazu and K. Kaneko  
title   2   "Relaxation to equilibrium can be hindered by transient dissipative structures" http://chaos.c.u-tokyo.ac.jp/papers/pr/awazu04.pdf
    3     Phys. Rev. Lett. 92 (2004) 258302  
paper   B     N. Nakagawa and K. Kaneko  
title   4   "Autonomous Energy Transducer: Proposition, Example, Basic Characteristics" http://chaos.c.u-tokyo.ac.jp/papers/hamil/autoene.pdf
          Physica A 338 (2004) 511-536  
proceeding A       K. Kaneko  
title 1   "Constructive and Dynamical Systems Approach to Life" http://chaos.c.u-tokyo.ac.jp/papers/others/birkhauser04.pdf
  2       Proceedings of Modelling and Theory in Biological systems , Function and Regulation of Cellular Systems:Experiments and Models,213-224, ed. by A.Deutsch, M.Falcke, J.Howard, W.Zimmermann(Birkhaeuser Verlag Basel)  
Year 2003
type theme author, title, journal, volume, page, year PDF
paper   B   D H. Morita and K. Kaneko  
title   3 2 "Self-Organized Bottleneck in Energy Relaxation" http://chaos.c.u-tokyo.ac.jp/papers/hamil/morita.pdf
          Europhys. Lett., 66(2003) 198-204  
paper A       K. Sato, Y. Ito, T. Yomo, and K. Kaneko  
title 4   "On the Relation between Fluctuation and Response in Biological Systems" http://133.11.199.19:8080/-_-http//www.pnas.org/cgi/reprint/100/24/14086.pdf
          Proc. Nat. Acad. Sci. USA 100 (2003) 14086-14090  
paper A       K. Kaneko  
title 2   "Recursiveness, Switching, and Fluctuations in a Replicating Catalytic Network" http://chaos.c.u-tokyo.ac.jp/papers/bio1/netprl4.pdf
          Phys. Rev.E. 68 (2003) 031909  
paper   B     K. Fujimoto and K. Kaneko  
title   5   "Bifurcation cascade realized by Chaotic Itinerancy"  
          Chaos 13 (2003) 1041-1056  
paper   B     N. Nakagawa and K. Kaneko, and T. Komatsu  
title   4   "Energy Conversion by Autonomous Regulation of Chaos: Dynamical Mechanism of Loose Coupling" http://chaos.c.u-tokyo.ac.jp/papers/chaos/chaos_energy.pdf
          Chaos, 13 (2003) 1032-1040  
paper   B     K. Fujimoto and K. Kaneko  
title   5   "How Fast Elements can Affect Slow Dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/Fujimoto-PhysD2003.pdf
          Physica D 180 (2003) 1-16  
paper   B     Y. Togashi and K. Kaneko  
title   1   "Alteration of Chemical Concentrations through Discreteness-Induced Transitions in Small Autocatalytic Systems" http://chaos.c.u-tokyo.ac.jp/papers/others/togashi03.pdf
          J.Phys.Soc. Japan 72 (2003)62-68  
paper A       C. Furusawa and K. Kaneko  
title 2   "Zipf's law in Gene Expression" http://chaos.c.u-tokyo.ac.jp/papers/pr/PRL88102.pdf
          Phys. Rev. Lett., 90 (2003) 088102 (selected in Faculty of 1000 Biology as hidden jewel )  
paper A       C. Furusawa and K. Kaneko  
title 1   "Robust Development as a Consequence of Generated Positional Information" http://chaos.c.u-tokyo.ac.jp/papers/bio1/posi.pdf
          J. Theor. Biol. 224 (2003) 413-435  
paper A       K. Kaneko  
title 2   "Recursiveness and Evolvability in Mutually Catalytic Reaction System" http://chaos.c.u-tokyo.ac.jp/papers/bio1/ws03.pdf
          Adv. in Complex Systems, Vol.6 (2003)79-92  
paper       D J. Ito and K. Kaneko  
title   1 "Spontaneous structure formation in a network of dynamic elements" http://chaos.c.u-tokyo.ac.jp/papers/pr/ito2003.pdf
          Phys Rev E 67 (2003) 046226  
paper   B     N. Nakagawa and K. Kaneko  
title   4   "Dynamical mechanism for the conversion of energy at a molecular scale" http://chaos.c.u-tokyo.ac.jp/papers/hamil/nah2003.pdf
          Phys. Rev. E 67 (2003) 040901(R)  
paper     C   A. Ponzi, A. Yasutomi, and K. Kaneko  
title   4   "A Nonlinear model of Economic Production Processes" http://chaos.c.u-tokyo.ac.jp/papers/others/ponzi2003.pdf
          Physica A 324 (2003) 372-379  
paper     C   N. Kataoka and K. Kaneko  
title   2   "Dynamical Networks in Function Dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/kataoka03.pdf
          Physica D 181 (2003) 235-251  
paper       D T. Shibata and K. Kaneko  
title   1 "Coupled Map Gas: structure formation and dynamics of interacting mobile elements with internal dynamics" http://chaos.c.u-tokyo.ac.jp/papers/gcm/shibata02.pdf
          Physica D 181(2003) 197-214  
paper A       T. Yamamoto and K. Kaneko  
title 5   "Tile Automaton in the well-mixed medium" http://chaos.c.u-tokyo.ac.jp/papers/bio0/yamamoto03.pdf
          Physica D 181 (2003) 252-273  
review       D K. Kaneko and I. Tsuda  
title   1 "Chaotic Itinerancy" http://chaos.c.u-tokyo.ac.jp/papers/chaos/chaos_chaotic.pdf
          Chaos, 13 (2003) 926-936  
review       D K. Kaneko  
title   1 "Prevalence of milnor attractors and chaotic itinerancy in 'high'-dimensional dynamical systems"  
          in Synchronization: Theory and Application, II.Math.Phys.Chem. vol.109(2003)65-77, (Kluwer Academic Publishers) edit.A.Pikovsky, Y.Maistrenko,   
review A       K. Kaneko  
title 1   "Organization through Intra-Inter Dynamics"  
          in Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary Biology (The Vienna Series in Theoretical Biology) (MIT press, 2003) eds. G. Mueller and S. Newman  
Year 2002
type theme author, title, journal, volume, page, year PDF
paper     C D K. Kaneko  
title   3 1 "Dominance of Minlnor attractors in Globally Coupled Dynamical Systems with more than 7 +- 2 degrees of freedom (retitled from `Magic Number 7 +- 2 in Globally Coupled Dynamical Systems') " http://chaos.c.u-tokyo.ac.jp/papers/gcm/magic7.pdf
          Phys. Rev. E.66, 055201(R) 2002  
paper A       C. Furusawa and K. Kaneko  
title 1   "Origin of Multicellular Organisms as an Inevitable Consequence of Dynamical Systems" http://chaos.c.u-tokyo.ac.jp/papers/bio1/astro.pdf
          Anatomical Record, 268 (2002) 327-342  
paper A       K. Kaneko  
title 4   "Symbiotic Sympatric Speciation: Compliance with Interaction-driven Phenotype Differentiation from a Single Genotype" http://chaos.c.u-tokyo.ac.jp/papers/bio1/speciation2002.pdf
          Population Ecology, 44 (2002) 71-85  
paper A       K. Kaneko  
title 2   "Kinetic Origin of Heredity in a Replicating System with a Catalytic Network" http://chaos.c.u-tokyo.ac.jp/papers/bio1/yomo02.pdf
          J. Biol. Phys., 28 (2002) 781-792  
paper   B     H. Takagi and K. Kaneko  
title   2   "Pattern Dynamics of a Multi-Component Reaction-Diffusion System:Differentiation of Replicating Spots" http://chaos.c.u-tokyo.ac.jp/papers/others/IJBC02.pdf
          Int. J. Bifurcation and Chaos, 11 (2002) 2579-2598  
paper       D J. Ito and K. Kaneko  
title   1 "Spontaneous structure formation in a network of chaotic units with variable connection strengths" http://chaos.c.u-tokyo.ac.jp/papers/pr/ito.pdf
          Phys. Rev. Lett., 88 (2002) 028701-1  
paper       D S. Ishihara and K. Kaneko  
title   3 "Simple dynamical system model of history dependent phenomena" http://chaos.c.u-tokyo.ac.jp/papers/cml/ishihara02.pdf
          J. Phys. Soc. Jpn, 71 (2002) 2357-2360  
paper A       K. Kaneko and T. Yomo  
title 2   "On a kinetic origin of heredity :minority control in replicating molecules" http://chaos.c.u-tokyo.ac.jp/papers/bio1/yomo01.pdf
          J. Theor. Biol. 214 (2002) 563-576 (nlin.AO/0105031)  
paper A       K. Kaneko and T. Yomo  
title 4   "Genetic Diversification through Interaction-driven Phenotype Differentiation" http://chaos.c.u-tokyo.ac.jp/papers/bio1/eer02.pdf
          Evol Eco. Res., 4 (2002) 317-350  
paper     C   E. Akiyama and K. Kaneko  
title   4   "Dynamical Systems Game Theory II" http://chaos.c.u-tokyo.ac.jp/papers/others/game2.pdf
          Phsyica D 167 (2002) 36-71  
review A     D K. Kaneko  
title 1 1 "From Coupled Dynamical Systems to Biological Irreversibility"  
          Adv. in Chem. Phys. 122 (2002) 53-73  
proceeding A       H. Takagi and K. Kaneko  
title 1   "Dynamic Relationship between Diversity and Plasticity of Cell types in Multi-cellular State"  
          Proceedings of the Eighth International Conference of Artificial Life, 79-88. (2002)  
Year 2001
type theme author, title, journal, volume, page, year PDF
paper A       C. Furusawa and K. Kaneko  
title 1   "Theory of Robustness of Irreversible Differentiation in a Stem Cell System: Chaos Hypothesis" http://chaos.c.u-tokyo.ac.jp/papers/bio1/stem.pdf
          J. Theor. Biol. 209 (2001) 395-416  
paper   B     Y. Togashi and K. Kaneko  
title   1   "Transitions Induced by the Discreteness of Molecules in a Small Autocatalytic System" http://chaos.c.u-tokyo.ac.jp/papers/pr/togashi.pdf
          Phys. Rev. Lett., 86 (2001) 2459-2462  
paper   B   D N. Nakagawa and K. Kaneko  
title   3 2 "Relaxation, the Boltzmann-Jeans Conjecture and Chaos" http://chaos.c.u-tokyo.ac.jp/papers/pr/bj.pdf
          Phys. Rev. E 64., (2001) 055205®-209  
paper     C   Y. Takahashi, N. Kataoka, K. Kaneko, and T. Namiki  
title   2   "Function Dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/kataoka-jjam.pdf
          Jap. J. J. Appl. Math., 18 (2001) 405-423  
paper   B     H. Takagi and K. Kaneko  
title   2   "Differentiation and Replication of Spots in a Reaction Diffusion System with Many Chemicals" http://chaos.c.u-tokyo.ac.jp/papers/others/EPL01.pdf
          Europhys. Lett. 56 (2001) 145-151  
paper     C   Naoto Kataoka and Kunihiko Kaneko  
title   2   "Functional Dynamics II: Syntactic structure" http://chaos.c.u-tokyo.ac.jp/papers/others/kataoka01.pdf
          Phsyica D 149 (2001) 174-196  
paper     C   A. Saito and K. Kaneko  
title   5   "Inaccessibility and Undecidability in Computation, Geometry and Dynamical Systems" http://chaos.c.u-tokyo.ac.jp/papers/others/saito.pdf
          Physica D 155 (2001) 1-33  
paper       D Koichi Fujimoto and Kunihiko Kaneko  
title   3 "Sensitive boundary condition dependence of noise-sustained structure" http://chaos.c.u-tokyo.ac.jp/papers/pr/fuji.pdf
          Phys. Rev. E. 63 (2001) 036128  
Book         K. Kaneko and I. Tsuda  
title     Complex Systems: Chaos and Beyond http://www.amazon.com/dp/3540672028/
          Springer 2001  
Year 2000
type theme author, title, journal, volume, page, year PDF
paper A       C. Furusawa and K. Kaneko  
title 1   "Complex Orgnization in multicullarity as a necessity in evolution" http://chaos.c.u-tokyo.ac.jp/study/~furusawa/research/alife2.pdf
          Artificial Life, 6(2000) 265-281  
paper A       H. Takagi, K. Kaneko, and T. Yomo  
title 4   "Evolution of genetic code through isologous diversification of cellular states" http://chaos.c.u-tokyo.ac.jp/papers/bio1/takagi.pdf
          Artificial Life 6(2000) 283-305  
paper   B   D N. Nakagawa, K. Kaneko and T.S. Komatsu  
title   3 2 "Long-term Relaxation of a Composite System in Partial Contact with a Heat Bath" http://chaos.c.u-tokyo.ac.jp/papers/others/nakagawa00.pdf
          J. Phys. Soc. Jpn, 69 (2000) 3214-3222  
paper     C   Naoto Kataoka, Kunihiko Kaneko  
title   2   "Natural language from functional dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/kataoka-BS2000.pdf
    Biosystems 57 (2000) 1-11  
paper A       Kunihiko Kaneko and Tetsuya Yomo  
title 4   "Sympatric Speciation: compliance with phenotype diversification from a single genotype" http://chaos.c.u-tokyo.ac.jp/papers/bio1/yomo00.pdf
          Proc. Roy. Soc. B, 267 (2000) 2367-2373  
paper     C   Naoto Kataoka and Kunihiko Kaneko  
title   2   "Functional Dynamics I : Articulation Process" http://chaos.c.u-tokyo.ac.jp/papers/others/kataoka00.pdf
          Physica D 138 (2000) 225-250  
paper A       C. Furusawa and K. Kaneko  
title 1   "Origin of complexity in multicellular organisms" http://chaos.c.u-tokyo.ac.jp/papers/pr/furusawa00.pdf
          Phys. Rev. Lett. 84 (2000) 6130-6133  
paper   B   D Naoko Nakagawa and Kunihiko Kaneko  
title   3 2 "Energy Storage in a Hamiltonian System in Partial Contact with a Heat Bath" http://chaos.c.u-tokyo.ac.jp/papers/hamil/nakagawa00.pdf
          J. Phys. Soc. Jpn. 69 (2000) 1255-1258  
paper       D Junji Ito and Kunihiko Kaneko  
title   1 "Self-organized hierarchical structure in a plastic network of chaotic units" http://arXiv.org/abs/cond-mat/9911416
          Neural Networks, 13 (2000) 275-281  
paper     C   Eizo Akiyama, Kunihiko Kaneko  
title   4   "Dynamical Systems Game Theory and Dynamics of Games" http://chaos.c.u-tokyo.ac.jp/papers/others/game.pdf
          Physica D 147 (2000) 221-258  
paper A       Kunihiko Kaneko and Chikara Furusawa  
title 1   "Robust and Irreversible Development in Cell Society as a General Consequence of Intra-Inter Dynamics" http://chaos.c.u-tokyo.ac.jp/papers/others/furusawa00.pdf
          Physica A 280 (2000) 22-33  
paper       D N.B. Ouchi and K. Kaneko  
title   1 "Coupled Map with Local and Global interactions"  
          Chaos 10 (2000) 359-365  
review A       M.A. Bedau, J.S. McCaskill, N.H. Packard, S. Rasmussen, C. Adami, D.G.Green, T. Ikegami, K. Kaneko, and. T.S. Ray  
title 5   "Open Problems in Artificial Life"  
          Artificial Life 6 (2000)  363-376  
proceeding   B     A. Saito and K. Kaneko  
title   5   "Inaccessibility in Decision Procedures"  
          in Unconventional Models of Computation" UMC'2K, edited by I. Antoniou et al., Springer, London, 215-233 (2000)  
proceeding A       Kunihiko Kaneko and Tetsuya Yomo  
title 4   "Sympatric Speciation from Interaction-induced Phenotype Differentiation"  
          Proceedings of the Artificial Life VII conference, MIT press (Bedau et al. ed., 2000) 113-121  
proceeding A       Chikara Furusawa and Kunihiko Kaneko  
title 1   "Complex organization in multicellularity as a necessity in evolution"  
  4       Proceeding of the Artificial Life VII conference, MIT press(Bedau et al. ed., 2000) 103-112  
proceeding A       Hiroaki Takagi and Kunihiko Kaneko  
title 1   "Evolution of genetic code through isologous diversification of cellular states"  
  4       Proceedings of the Artificial Life VII conference, MIT press(Bedau et al. ed., 2000) 122-131  
proceeding     C   Eizo Akiyama, Kunihiko Kaneko  
title   4   "Social Dilemma and Dynamical Systems Game"  
          Proceedings of the Artificial Life VII conference, MIT press(Bedau et al. ed., 2000) 186-195